CPA for Amazon, Shopify and E-commerce Sellers in Los Angeles

MangoBooks, a Los Angeles CPA firm, keeps the books and prepares the tax returns for sellers on Amazon, Shopify, Etsy, eBay and Walmart and for brands that sell from their own sites. Each marketplace settlement and payout is reconciled to gross sales, fees, refunds and reserves rather than booked as a deposit, inventory and cost of goods sold are tracked for the return, and the company's return or the owner's Schedule C is prepared from the same books, with California's marketplace facilitator and $500,000 rules applied to the seller's own situation. Monthly bookkeeping typically costs $650–$1,400 per month, a business tax return $2,000–$3,500 per year, and an individual return with a business $1,100–$1,800.

The work is led by Felix Park, CPA, MBA, a licensed California CPA with an MBA from the UCLA Anderson School of Management.

Situations We Handle

Settlements, payouts and Form 1099-K. A marketplace pays out what is left after its fees, refunds and reserves, so a seller who books the deposit as revenue understates sales and loses the fees as a deduction. We record each settlement and payout as gross sales, fees, refunds, reserves and the sales tax the platform collected, in a clearing account for each channel, and reconcile the totals on each Form 1099-K, which a payment app or online marketplace issues once payments for goods or services exceed $20,000 and 200 transactions, to the books before the return is filed. See Bookkeeping.

Inventory and cost of goods sold. A small business taxpayer, one with average annual gross receipts for the three prior tax years of $31 million or less for 2025 returns, $32 million for tax years beginning in 2026, may treat inventory as non-incidental materials and supplies and deduct the cost when the items are first used or consumed, or follow the treatment in its financial statements; otherwise an accrual method is required for purchases and sales of inventory. We set the method with the owner, apply it the same way across every channel, and carry purchases, the year-end count and cost of goods sold into Part III of Schedule C or the company return.

The seller's permit and the marketplace facilitator rules. Since October 1, 2019 a marketplace facilitator such as Amazon, Walmart, Etsy or eBay is the retailer for the sales it facilitates for delivery into California and collects, reports and pays the tax on them. A seller whose California sales all go through a registered facilitator is not required to hold a seller's permit; a seller who also sells direct to California customers, or who has inventory in California, including stock at a third party's California fulfillment center, must register. A registered marketplace seller reports its total sales, including marketplace sales, and deducts the facilitated sales as "other", keeping documentation that the facilitator is registered and its permit number. A seller's permit has no fee, though the CDTFA may require a security deposit, and a business with an office, warehouse or other place of business in California, even a temporary one, is engaged in business here. The books separate California sales by channel and the tax collected on each, so the return the CDTFA requires can be prepared from them on the filing frequency it assigns; a seller whose tax averages $17,000 or more a month is placed on quarterly prepayments due the 24th of the following month, with the quarterly return due the last day of the month after the quarter.

The $500,000 threshold and district taxes. A retailer whose sales of tangible merchandise for delivery into California exceed $500,000 in the preceding or current calendar year, counting marketplace-facilitated sales and sales by related persons, is engaged in business in every taxing district in the state and collects each district's use tax; below that figure it collects district tax only where it has a physical presence. The statewide base rate is 7.25 percent; with district taxes the City of Los Angeles rate is 10.25 percent from October 1, 2026, Burbank and Glendale 11 percent, Calabasas 11.25 percent, Thousand Oaks 7.25 percent and Irvine 7.75 percent. Shipping on a taxable sale is not taxable only when the goods go by common carrier, contract carrier or US Mail, the charge is separately stated, and it does not exceed the actual cost; handling is taxable, a combined shipping and handling charge is taxable on the handling portion, and without records of the actual delivery cost the whole charge is taxable. This page covers California; other states set their own thresholds, by sales, by transactions or both.

Buying for resale. A resale certificate given to a supplier states the buyer's name and address, its seller's permit number or an explanation of why none is required, a description of the goods, the words "for resale", the date and a signature; a marketplace seller without a permit may explain that all of its sales go through a registered facilitator and give the facilitator's permit number. We keep the certificates with the purchase records so the inventory purchases on the return are supported.

The entity, payroll and the owner's return. A sole proprietor reports the store on Schedule C ($1,100–$1,800 for the return). An LLC pays California's $800 annual tax and, from $250,000 of total California income, the LLC fee of $900, $2,500, $6,000 or $11,790 by tier, and an LLC or corporation that elects S status pays 1.5 percent of its net income with an $800 minimum, pays its owner reasonable compensation through payroll, and files Form 1120-S with Form 100S. A seller in the City of Los Angeles holds a Business Tax Registration Certificate and pays $1.27 per $1,000 of gross receipts on retail sales and $1.01 per $1,000 on wholesale sales, keeping the two apart; a registered business with worldwide gross receipts of $100,000 or less pays no tax when it renews on time, and the renewal is due by the last day of February. We compare the structures with the store's figures, run payroll for warehouse staff or the owner's salary, and prepare the company's return and the owner's return together. See Business Formation and Business Tax Preparation.

California Specifics

  • Marketplace facilitators. Since October 1, 2019 the facilitator is the retailer for the sales it facilitates for delivery into California and collects, reports and pays the tax on them.
  • Who holds a seller's permit. Not a seller whose California sales all go through a registered facilitator; yes, a seller who also sells direct to California customers or has inventory in California, including at a third party's fulfillment center.
  • Reporting facilitated sales. A registered marketplace seller reports total sales, including marketplace sales, and deducts the facilitated sales as "other", keeping proof of the facilitator's registration.
  • The $500,000 threshold. Sales of tangible merchandise for delivery into California above $500,000 in the preceding or current calendar year, counting facilitated sales and sales of related persons, make the retailer engaged in business in every district in the state.
  • Rates from October 1, 2026. Statewide base 7.25 percent; City of Los Angeles 10.25 percent; Burbank and Glendale 11 percent; Calabasas 11.25 percent; Thousand Oaks 7.25 percent; Irvine 7.75 percent.
  • Filing frequency. Assigned by the CDTFA as quarterly prepayment, quarterly, monthly, fiscal yearly or yearly; tax averaging $17,000 or more a month means quarterly prepayments due the 24th of the following month; the quarterly return is due the last day of the month after the quarter.
  • Shipping and handling. Separately stated shipping by common carrier, contract carrier or US Mail at no more than actual cost is not taxable; handling is.
  • Resale certificates. Six elements: name and address, permit number or the reason none is required, description, "for resale", date and signature.
  • Permit and presence. No fee for a seller's permit, though a security deposit may be required; an office, sales room, warehouse or other place of business in California, even temporary, means engaged in business in the state.
  • City of Los Angeles business tax. Retail sales $1.27 and wholesale sales $1.01 per $1,000 of gross receipts, segregated when a business does both; registration is required even when the $100,000 small business exemption applies.
  • LLC and S corporation. The $800 LLC annual tax and the fee from $250,000 of total California income; 1.5 percent of net income with an $800 minimum for an S corporation.

Federal Rules

  • Form 1099-K. Issued by a payment app or online marketplace when payments for goods or services exceed $20,000 and 200 transactions in the year.
  • Inventory for a small business taxpayer. Average annual gross receipts for the three prior tax years of $31 million or less for 2025 returns, $32 million for tax years beginning in 2026: inventory may be treated as non-incidental materials and supplies or follow the financial statements; otherwise an accrual method applies to inventory.
  • Cost of goods sold. Reported in Part III of Schedule C by a sole proprietor, from beginning inventory, purchases and ending inventory.
  • Reasonable compensation. An S corporation pays its shareholder-employee reasonable compensation through payroll before non-wage distributions.
  • Form 1099-NEC. Required for payments made in 2026 once a contractor receives $2,000 or more in the year.
  • Estimated payments. Due April 15, June 15, September 15 and January 15 when $1,000 or more of federal tax is expected; California asks for 30, 40, 0 and 30 percent on the same dates once $500 or more is expected.

Where We Work

We serve online sellers across Los Angeles, including the San Fernando Valley communities around our office in Woodland Hills (Encino, Sherman Oaks, Tarzana, Calabasas and Burbank) and the Conejo Valley (Thousand Oaks, Westlake Village and Agoura Hills), and in Irvine, Anaheim and Newport Beach and in Ventura, Oxnard and Simi Valley. Meetings are scheduled in advance, and documents are exchanged electronically. The sales tax rate a seller collects depends on the customer's city once the $500,000 threshold is passed, and the business license a seller holds depends on its own city; both are on the area pages: CPA in the San Fernando Valley, CPA for the Conejo Valley, CPA for Irvine, Anaheim and Newport Beach and CPA for Ventura, Oxnard and Simi Valley.

Services Involved

  • Bookkeeping: each channel's settlements and payouts reconciled to gross sales, fees, refunds and reserves; inventory and cost of goods sold; the bank and card accounts
  • Business Tax Preparation: Form 1120-S, 1065 or 1120 with the California return and a K-1 for each owner
  • Individual Tax Preparation: Schedule C with Part III cost of goods sold, or the owner's return with K-1s
  • Payroll: warehouse and fulfillment staff and the owner's salary in an S corporation
  • Business Formation: the LLC or S corporation for a growing store
  • Tax Planning: estimated payments, the entity comparison and the inventory method
  • Catch-Up Bookkeeping: prior years of settlements that were never booked

Fees

ServiceTypical range
Monthly bookkeeping$650–$1,400 per month
Catch-up bookkeepingFrom $1,500
Business tax return (1120-S, 1065 or 1120 with the California return)$2,000–$3,500 per year
Owner's individual return with a business (Schedule C)$1,100–$1,800
Owner's individual return with K-1s$2,500–$4,500
Payroll$175–$400 per month
LLC or S corporation setupFrom $950 plus state fees

Tax planning is quoted after a consultation. Fees depend on the scope of work and are set out in a written engagement letter before work begins. See the Fee Guide.

Frequently Asked Questions

If Amazon collects California sales tax on my sales, do I still need a seller's permit or a return?

It depends on how you sell. Since October 1, 2019 a marketplace facilitator such as Amazon, Walmart, Etsy or eBay is the retailer for the sales it facilitates for delivery into California and collects, reports and pays the tax on them. A seller whose California sales all go through a registered facilitator is not required to hold a seller's permit. A seller who also sells direct to California customers from its own site, or who has inventory in California, including stock at a third party's California fulfillment center, must register; it then reports total sales on its return, including marketplace sales, and deducts the facilitated sales, keeping proof that the facilitator is registered.

How do you reconcile Amazon settlements and Shopify payouts?

Each settlement or payout is broken into gross sales, marketplace and processing fees, refunds, reserves and sales tax collected by the platform, rather than recorded as a deposit. The sales figure on the return is therefore gross sales, the fees are deducted as expenses, and the totals on each Form 1099-K, which a payment app or online marketplace issues once payments exceed $20,000 and 200 transactions, are reconciled to the books before the return is filed. See Bookkeeping.

What changes when sales into California pass $500,000?

A retailer whose sales of tangible merchandise for delivery into California exceed $500,000 in the preceding or current calendar year, counting sales made through a marketplace and sales by related persons, is engaged in business in every taxing district in the state and collects each district's use tax wherever the customer is. Below that figure a seller collects district tax only where it has a physical presence. The statewide base rate is 7.25 percent; with district taxes the City of Los Angeles rate is 10.25 percent from October 1, 2026, Burbank and Glendale 11 percent, Calabasas 11.25 percent, Thousand Oaks 7.25 percent and Irvine 7.75 percent. This page covers California; other states set their own thresholds.

How is inventory handled on a small seller's return?

A small business taxpayer, one with average annual gross receipts for the three prior tax years of $31 million or less for 2025 returns, $32 million for tax years beginning in 2026, may treat inventory as non-incidental materials and supplies and deduct the cost when the items are first used or consumed, or follow the treatment in its financial statements; a larger seller uses an accrual method for purchases and sales of inventory. We set the method with you, apply it the same way across every channel, and carry the year-end inventory into Part III of Schedule C or the company return. See Individual Tax Preparation.

Are shipping charges taxable in California?

Shipping on a taxable sale is not taxable only when the goods go by common carrier, contract carrier or US Mail, the charge is separately stated, and it does not exceed the actual cost of delivery. Handling is taxable, a combined shipping and handling charge is taxable on the handling portion, and when there are no records of the actual delivery cost the whole charge is taxable.

What do the books and the return cost for an e-commerce business?

Monthly bookkeeping, with each channel's settlements and payouts reconciled, typically costs $650–$1,400 per month, and prior periods that were never booked are brought current from $1,500. A business tax return for an LLC taxed as an S corporation or partnership, or for a corporation, with the California return is $2,000–$3,500 per year; a sole proprietor's return with the store on Schedule C is $1,100–$1,800, and an owner's return with K-1s $2,500–$4,500. Payroll for warehouse staff or the owner's salary is $175–$400 per month. Each fee is set out in a written engagement letter before work begins. See the Fee Guide.

Schedule a Consultation

Call (213) 255-4665 or send us a short message about your situation.

Privacy Policy

Please do not include Social Security numbers, bank account numbers or tax documents in the form.

CallRequest a Consultation